PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00650g28013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 139aa    MW: 15629.9 Da    PI: 8.8388
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00650g28013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.74.1e-301059251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              ri+n++nrqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+++s
  Peinf101Scf00650g28013.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDFAS 59
                              8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
CDDcd002653.81E-46276No hitNo description
SuperFamilySSF554556.54E-33277IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTNRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDFASS  60
SMRSAIERYN KMKEDHNHLM NAMSEVTIYF VECDFPGEQI LLTSGEGMCA GDKPETGFTY  120
ALVKSWSDAS SISVFRREV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D3e-22276175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-22276175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-22276175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A3e-22276175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J4e-22282181Myocyte-specific enhancer factor 2A
3p57_I4e-22282181Myocyte-specific enhancer factor 2A
3p57_D4e-22282181Myocyte-specific enhancer factor 2A
3p57_C4e-22282181Myocyte-specific enhancer factor 2A
3p57_B4e-22282181Myocyte-specific enhancer factor 2A
3p57_A4e-22282181Myocyte-specific enhancer factor 2A
3kov_J4e-22282181Myocyte-specific enhancer factor 2A
3kov_I4e-22282181Myocyte-specific enhancer factor 2A
3kov_B4e-22282181Myocyte-specific enhancer factor 2A
3kov_A4e-22282181Myocyte-specific enhancer factor 2A
1tqe_S5e-22182182Myocyte-specific enhancer factor 2B
1tqe_R5e-22182182Myocyte-specific enhancer factor 2B
1tqe_Q5e-22182182Myocyte-specific enhancer factor 2B
1tqe_P5e-22182182Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828468.11e-47PREDICTED: MADS-box transcription factor ANR1-like
RefseqXP_014623536.12e-47PREDICTED: MADS-box transcription factor 23-like isoform X3
SwissprotQ9SI382e-43ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A0R0FWL72e-47A0A0R0FWL7_SOYBN; Uncharacterized protein
STRINGGLYMA08G07001.12e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.19e-45AGAMOUS-like 44